I have a theory that may explain what you are seeing. Tanins, if they are leaching into the water, may be lowering the PH. If that is the case, the more acidic the water becomes, the less efficient BB are at processing ammonia in the water. If that is the case, an ammonia spike would be what you would expect to see. It will balance itself out; however, until it does, you'll need to do water changes to keep the ammonia at .25ppm or below.
With this ammonia, you may seeing a small nitrite spike as well. Keep an eye out for that, and do your water changes to keep it at .25ppm or below.
This should resolve itself.
Now I have been told tannins from driftwood don't really affect PH. I have not tested that for myself so I can't speak to whether that is accurate or not. It is the only explanation I can see given the circumstances of your set up.